PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_05546

Common Name

KK1_005684

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB

Protein Properties

Length: 234aa MW: 26951.3 Da PI: 7.7019

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_05546	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+++G ++W+ I++ ++ gR++k+c++rw + C.cajan_05546 10 KGSWSPQEDATLLKLVNEHGARNWSVISSGIP-GRSGKSCRLRWCNQ 55 799***************************.*********985 PP
2	Myb_DNA-binding	55.9	9.9e-18	64	106	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++v+a++ +G++ W+tI+r ++ gRt++ +k++w++ C.cajan_05546 64 PFTPAEDRIIVKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 106 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.611	5	56	IPR017930	Myb domain
SuperFamily	SSF46689	4.67E-30	8	103	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-15	9	58	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-18	10	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-24	11	63	IPR009057	Homeodomain-like
CDD	cd00167	6.94E-14	12	54	No hit	No description
PROSITE profile	PS51294	24.674	57	111	IPR017930	Myb domain
SMART	SM00717	4.8E-15	61	109	IPR001005	SANT/Myb domain
CDD	cd00167	1.08E-11	64	107	No hit	No description
Pfam	PF00249	1.3E-14	64	106	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-22	64	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MIDSGDDRVK GSWSPQEDAT LLKLVNEHGA RNWSVISSGI PGRSGKSCRL RWCNQLSPEV 60 QHRPFTPAED RIIVKAHAIH GNKWATISRL LPGRTDNAIK NHWNSTLRRH RAASASSDSP 120 PPPAKRPSVF DTFRPLKKLC IEKETEEERL ASTVTTSLSL FPPGERSEED EEEKEKEEEF 180 EVNTIMSDNQ KRFIQVIRRM IAEEVRNYFH TLRLQERDNP FLQHDLDFHP IVPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-37	9	109	3	103	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_05546

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229268.1	1e-174	transcription factor MYB44
TrEMBL	A0A151U172	1e-172	A0A151U172_CAJCA; Transcription factor MYB44
STRING	GLYMA02G43280.1	1e-99	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11600	29	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	4e-51	myb domain protein 77