PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05622
Common NameKK1_005762
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 415aa    MW: 45521.1 Da    PI: 7.7794
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05622genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-104873126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   ++++ C +++rtG C yG++C+++H+
  C.cajan_05622 48 PGEPDCLYYLRTGMCGYGSNCRYHHP 73
                   5789*********************8 PP
2zf-CCCH37.63.8e-1292116327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C +f++tGtCkyG++Ck++H++
  C.cajan_05622  92 QPDCEYFLKTGTCKYGSTCKYHHPK 116
                    789********************96 PP
3zf-CCCH38.12.5e-12139161527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     C++++rtG Ck+G  CkF+H++
  C.cajan_05622 139 SCPYYMRTGSCKFGVACKFHHPQ 161
                    6********************97 PP
4zf-CCCH40.16.1e-13272297227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++Cr+f+ tGtCkyG+ CkF+H++
  C.cajan_05622 272 DQPECRYFMSTGTCKYGSDCKFHHPK 297
                    689*********************96 PP
5zf-CCCH322e-10315339226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C++++ +G Ck+G++CkF H+
  C.cajan_05622 315 GQAVCSYYRIYGMCKFGPTCKFDHP 339
                    7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9864775IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-74973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-65274IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.42289117IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-595116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4136161IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5139162IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624270298IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7274299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-6276297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5311339IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544313341IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7315339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MPENRQVLRN ADSTPSSDNI EEAIQRLKIN DNWDRDAAAQ STQYPDRPGE PDCLYYLRTG  60
MCGYGSNCRY HHPAHISIGT HYGEELPQRV GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG  120
AAPVSFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QHASLGAYPL AGSPTSTIIP  180
TSGLPYVGGF PAWSAPRMSY LSGQGLQSYV PQFMPSSQGI VPVQSWNSYM GSMNPAMPAG  240
FLGSNLVYDF MNLGESVFGG QAINSALPNR PDQPECRYFM STGTCKYGSD CKFHHPKERI  300
AQSLINPLGL PVRPGQAVCS YYRIYGMCKF GPTCKFDHPV LTMPQNYGLT SPVLDTPLIS  360
NPRGLSSVQP PETSPSKLST DKLQNSGTKA ATEDSSTQAD TTSNSFPASS EPLHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05622
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237331.10.0zinc finger CCCH domain-containing protein 3 isoform X3
TrEMBLA0A151U1F30.0A0A151U1F3_CAJCA; Zinc finger CCCH domain-containing protein 3
STRINGXP_007141660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-120C3H family protein