PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_05948

Common Name

KK1_006097

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YB

Protein Properties

Length: 142aa MW: 15592.5 Da PI: 7.1679

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_05948	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	115.6	2.4e-36	1	62	36	97
NF-YB 36 qecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 qecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+plkvyl+++re+egek C.cajan_05948 1 QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLQRFREIEGEK 62 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-31	1	71	IPR009072	Histone-fold
Pfam	PF00808	2.7E-12	1	36	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.59E-25	1	90	IPR009072	Histone-fold
PROSITE pattern	PS00685	0	3	19	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.8E-10	19	37	No hit	No description
PRINTS	PR00615	1.8E-10	38	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
QECVSEFISF ITGEASDKCQ REKRKTINGD DLLWAMTTLG FEDYVDPLKV YLQRFREIEG 60 EKTVAARDKD AASAAATYDY PSPSPSPSPA VMHHHHHHHH HGHGHVYGSP AFHAPVMPMP 120 KPGPLPGPGP GPGPTYPPGR PR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-28	1	57	37	93	NF-YB
4awl_B	1e-28	1	57	38	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-28	1	57	38	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_05948

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288037	2e-51	AB288037.1 Oryza sativa Japonica Group OsHAP3F gene for HAP3 subunit of HAP complex, complete cds.
GenBank	AK111621	2e-51	AK111621.1 Oryza sativa Japonica Group cDNA clone:J013109P12, full insert sequence.
GenBank	AK112118	2e-51	AK112118.1 Oryza sativa Japonica Group cDNA clone:002-139-C11, full insert sequence.
GenBank	AP005193	2e-51	AP005193.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0493C06.
GenBank	AP006458	2e-51	AP006458.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06.
GenBank	AP014963	2e-51	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229831.1	1e-101	nuclear transcription factor Y subunit B-10
TrEMBL	A0A151U2B1	1e-100	A0A151U2B1_CAJCA; Nuclear transcription factor Y subunit B-3 (Fragment)
STRING	XP_007142418.1	3e-58	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	5e-41	nuclear factor Y, subunit B3