PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_06066
Common NameKK1_006233
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 263aa    MW: 30618.4 Da    PI: 9.3194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_06066genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.2e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
    C.cajan_06066 23 KGPWTSEEDRLLLEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                     79********************************************97 PP
2Myb_DNA-binding544e-1776120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
    C.cajan_06066  76 RGQITPQEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0071870IPR017930Myb domain
SMARTSM007172.1E-162272IPR001005SANT/Myb domain
SuperFamilySSF466891.03E-2922117IPR009057Homeodomain-like
PfamPF002492.2E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-242477IPR009057Homeodomain-like
CDDcd001671.18E-112570No hitNo description
PROSITE profilePS5129424.62271125IPR017930Myb domain
SMARTSM007176.4E-1575123IPR001005SANT/Myb domain
PfamPF002491.3E-1476120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2478124IPR009057Homeodomain-like
CDDcd001674.08E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MFWGEVMAGH IGRGVIEEEV WRKGPWTSEE DRLLLEYVRL HGEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PQEESIIVEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKTKSPSD AAEKARNRLL RKQQFHQQQQ LQFQQQQAQQ QQQLQFNFDM KGIMAFLEEN  180
YHRAPYVSQT RQEMVNMHQN TTEEQGYLYS MLNSSSSGCS APETSGEENL WDGLWNLDDV  240
HGNFSVASAA SKAGLYNLVA PFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-27512510128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_06066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967530.0BT096753.1 Soybean clone JCVI-FLGm-15B2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210081.10.0transcription factor MYB2
TrEMBLA0A151U2R00.0A0A151U2R0_CAJCA; Myb-related protein 305 family
STRINGGLYMA10G26681.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-85myb domain protein 305