PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_06129
Common NameKK1_006298
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29694.8 Da    PI: 10.4969
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_06129genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.1e-29959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   k+ien   rqvtfskRrng+lKKA+ELSvLCdaevaviifsstgklye+s+
  C.cajan_06129  9 KKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSN 59
                   68***********************************************95 PP
2K-box61.24.1e-21901741498
          K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                    ++ ++ + + Lk+ei +L++   +++G++L+ LslkeLq+Le+qL ++++ +++kK+++l+eq+++++ +e+++  en+ Lrk++
  C.cajan_06129  90 NQDMEGDTNLLKDEITKLRSAYIRMMGKELDGLSLKELQHLENQLSEGIQAVKNKKEQVLVEQLRRSRIQEQKAMLENEVLRKQV 174
                    578899999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.983161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-33276IPR002100Transcription factor, MADS-box
CDDcd002651.54E-42276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.67890180IPR002487Transcription factor, K-box
PfamPF014866.9E-1591174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KAKELSVLCD AEVAVIIFSS TGKLYEFSNT  60
SMEHILSRYS KGVESDCAEQ PLVLLLRTFN QDMEGDTNLL KDEITKLRSA YIRMMGKELD  120
GLSLKELQHL ENQLSEGIQA VKNKKEQVLV EQLRRSRIQE QKAMLENEVL RKQVRIKPDS  180
KVNYNYVKLT FHHKQSIFLF IFNLLIVNSL RRCKIKQRHS SLNSVLWIGH FPRMVQNPFS  240
IVLQRKMTFQ ILPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-21171171MEF2C
5f28_B9e-21171171MEF2C
5f28_C9e-21171171MEF2C
5f28_D9e-21171171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_06129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354151e-102AC235415.1 Glycine max strain Williams 82 clone GM_WBb0132C18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207051.11e-109agamous-like MADS-box protein AGL18
SwissprotQ9M2K84e-59AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A151U3010.0A0A151U301_CAJCA; Agamous-like MADS-box protein AGL15
STRINGGLYMA02G33040.13e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-61AGAMOUS-like 18