PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_06184
Common NameKK1_006354
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26277.5 Da    PI: 7.5464
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_06184genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1956110357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    k+ ++t+eql+ Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+
  C.cajan_06184  56 KKKRLTSEQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKN 110
                    56779************************************************95 PP
2HD-ZIP_I/II118.14.9e-3855146192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekk+rl++eq+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++Le+ev +L++ ++
  C.cajan_06184  55 EKKKRLTSEQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKEEFDVISKEKQKLEEEVMKLKAMVR 146
                    69**************************************************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.46E-1946113IPR009057Homeodomain-like
PROSITE profilePS5007117.21651111IPR001356Homeobox domain
SMARTSM003891.0E-1854115IPR001356Homeobox domain
CDDcd000862.19E-1656112No hitNo description
PfamPF000461.0E-1656110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-2257118IPR009057Homeodomain-like
PRINTSPR000313.5E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000313.5E-591107IPR000047Helix-turn-helix motif
PfamPF021839.0E-8111145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEWNGSTRRY VPRPEASLSF LYNYNYTPYP GMEVKEQTLA ETSSSMEKIN CGSQEKKKRL  60
TSEQLDSLES SFQKEIKLDP DRKMKLSKEL GLQPRQIAVW FQNRRARWKN KQLEHLYDSL  120
KEEFDVISKE KQKLEEEVMK LKAMVREQAS RTQVSTGYTE ISGEETVEST SEALRCSKRG  180
TLHHHHQQQQ QQNIGEGNCS AFTLEDYNTV PVLPYWPGVN VPYYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_06184
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980090.0BT098009.1 Soybean clone JCVI-FLGm-11N12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210274.11e-169putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR04e-50ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A151U3481e-167A0A151U348_CAJCA; Putative homeobox-leucine zipper protein ATHB-51
STRINGGLYMA13G21330.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-52homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]