PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_06248

Common Name

KK1_006420

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Trihelix

Protein Properties

Length: 406aa MW: 47099.2 Da PI: 6.5153

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_06248	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.4	1e-24	88	184	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d + C.cajan_06248 88 KWTDTMVRLLIMAVYYIGDEAGSEGsdkkkssglmQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLDTM 183 7************99888875322556788888******************************************559*******999 PP trihelix 86 e 86 + C.cajan_06248 184 D 184 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-21	86	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MFSALVGVEN PHNLPHHPQM VPYATHHETD PHHPHLQHQS IKHGYPNYSS SKTKQPQQQQ 60 QQSTLSDEDE PGGDEDPKRK VSPWQRMKWT DTMVRLLIMA VYYIGDEAGS EGSDKKKSSG 120 LMQKKGKWKS VSRAMMEKGF YVSPQQCEDK FNDLNKRYKR VNDILGKGTA CRVVENQSLL 180 DTMDLSPKMK EEVKKLLNSK HLFFREMCAY HNSCGHGNNS NVPQQGEMLK VGNGEEEDEE 240 EEEEDESEDD SDEDEDDSGE GGSRGQVGHG HEDENDGRST RKRARKGVSM SPHVMQQLNA 300 EVSGVFQDGG RSAWDKKQWM RGRIMQLEEQ QLSYQTQAFE LEKQRLKWAR FSSKKEREME 360 RAKLENERRR LENERMVLLI RQKEIELMSH QHQHQQQQQQ QQHSST

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MFSALVGVEN PHNLPHHPQM VPYATHHETD PHHPHLQHQS IKHGYPNYSS SKTKQPQQQQ  60
QQSTLSDEDE PGGDEDPKRK VSPWQRMKWT DTMVRLLIMA VYYIGDEAGS EGSDKKKSSG  120
LMQKKGKWKS VSRAMMEKGF YVSPQQCEDK FNDLNKRYKR VNDILGKGTA CRVVENQSLL  180
DTMDLSPKMK EEVKKLLNSK HLFFREMCAY HNSCGHGNNS NVPQQGEMLK VGNGEEEDEE  240
EEEEDESEDD SDEDEDDSGE GGSRGQVGHG HEDENDGRST RKRARKGVSM SPHVMQQLNA  300
EVSGVFQDGG RSAWDKKQWM RGRIMQLEEQ QLSYQTQAFE LEKQRLKWAR FSSKKEREME  360
RAKLENERRR LENERMVLLI RQKEIELMSH QHQHQQQQQQ QQHSST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_06248

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-165	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020210333.1	0.0	putative uncharacterized protein DDB_G0271606
TrEMBL	A0A151U365	0.0	A0A151U365_CAJCA; Uncharacterized protein
STRING	GLYMA13G21350.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4820	34	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	6e-94	sequence-specific DNA binding transcription factors