PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_06813

Common Name

KK1_007005

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB_related

Protein Properties

Length: 984aa MW: 111971 Da PI: 10.1704

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_06813	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.3e-11	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a+ + +R+++++ C.cajan_06813 46 QWSKEELERFYEAYRKYGKD-WKKVAAVVR-NRSAEMVE 82 6***************99.*****.**9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.74E-11	41	90	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.808	42	95	IPR017884	SANT domain
SMART	SM00717	1.5E-6	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-9	46	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-6	46	85	IPR009057	Homeodomain-like
CDD	cd00167	4.66E-7	47	88	No hit	No description
SMART	SM01135	4.9E-57	626	727	IPR033471	DIRP domain
Pfam	PF06584	5.4E-33	626	726	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
MAPTRKSRSV NKRISSSDDI SPEKDGVNSN KNKQRKKKLT DKLGSQWSKE ELERFYEAYR 60 KYGKDWKKVA AVVRNRSAEM VEALYNMNRA YLSLPEGTAS VVGLVAMMTD HYNVLEGSDS 120 ERESNDAPGS RKPVKRKREK VQLSVSKDPV QSHSFASSDD CLSLLKKRCF DGKLPVGKRT 180 PRVLVKKDET ENYVSPYRRS LKSTVDANDD EVAHVVALTL TEASQRGGSP QVSQSPYRRV 240 ERNSSPVQSW HKMSGTARAK FHDVSADEEF LECSVSVESR GAENGEYARD NSSLMDMEGI 300 GAVEVHHKGE KFYRKRERVK IVGSHQLDDG GEACSGTEEG LSFSSQKEKV DIEVTNDKLE 360 KFSPNGQRKR NKKLFFGDET PSLNALQTLA DLSLMMPTSK LESESSIQLK GERMAADKDE 420 KSALREATSI SHKKHKLKHC VVPEIEVSTS KKSKLGKELT KTTNALSESK EQLPFADTIL 480 KRKRKSMGSK VASAKLDSYP SGPLKDGALD DENKLVVKGK HTDQVLPLPK QLKIVKSSES 540 SVCSEQKDLT VSAAEVPLLN EVSIPTKRSR RKIILQRTSL PKEKSSDYIL KTLYLKYNNV 600 LYNLQEKLSS CLSSNMVRRW FIFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW 660 SVIKSSLGKP RRFSEHFLRE ERQKLEQYRE SVRKHYTELR TGARDGLPTD LARPLYVGQR 720 VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMN WPFPFLKIRK QILLNPQLQR 780 ARSLVILPTE SSSRRGYRTG EGSSRGRSSR LLDRGFKSDR WVFTMAPPFL VRASSIRSPR 840 VANNAADLRR RRRRLLWNLF DFSPLQDFNL ITILKNIFIS HSSSSIFRNL FVVGLATNLV 900 MVALDCRETC YSSEHHLSTI SSSDFREKLL TCTERQYPPA DVAQILDSAV TSLHPCCPRN 960 LPIYREIQMC MGRIKTQILA LIPT

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

MAPTRKSRSV NKRISSSDDI SPEKDGVNSN KNKQRKKKLT DKLGSQWSKE ELERFYEAYR  60
KYGKDWKKVA AVVRNRSAEM VEALYNMNRA YLSLPEGTAS VVGLVAMMTD HYNVLEGSDS  120
ERESNDAPGS RKPVKRKREK VQLSVSKDPV QSHSFASSDD CLSLLKKRCF DGKLPVGKRT  180
PRVLVKKDET ENYVSPYRRS LKSTVDANDD EVAHVVALTL TEASQRGGSP QVSQSPYRRV  240
ERNSSPVQSW HKMSGTARAK FHDVSADEEF LECSVSVESR GAENGEYARD NSSLMDMEGI  300
GAVEVHHKGE KFYRKRERVK IVGSHQLDDG GEACSGTEEG LSFSSQKEKV DIEVTNDKLE  360
KFSPNGQRKR NKKLFFGDET PSLNALQTLA DLSLMMPTSK LESESSIQLK GERMAADKDE  420
KSALREATSI SHKKHKLKHC VVPEIEVSTS KKSKLGKELT KTTNALSESK EQLPFADTIL  480
KRKRKSMGSK VASAKLDSYP SGPLKDGALD DENKLVVKGK HTDQVLPLPK QLKIVKSSES  540
SVCSEQKDLT VSAAEVPLLN EVSIPTKRSR RKIILQRTSL PKEKSSDYIL KTLYLKYNNV  600
LYNLQEKLSS CLSSNMVRRW FIFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW  660
SVIKSSLGKP RRFSEHFLRE ERQKLEQYRE SVRKHYTELR TGARDGLPTD LARPLYVGQR  720
VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMN WPFPFLKIRK QILLNPQLQR  780
ARSLVILPTE SSSRRGYRTG EGSSRGRSSR LLDRGFKSDR WVFTMAPPFL VRASSIRSPR  840
VANNAADLRR RRRRLLWNLF DFSPLQDFNL ITILKNIFIS HSSSSIFRNL FVVGLATNLV  900
MVALDCRETC YSSEHHLSTI SSSDFREKLL TCTERQYPPA DVAQILDSAV TSLHPCCPRN  960
LPIYREIQMC MGRIKTQILA LIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	847	854	LRRRRRRL
2	848	853	RRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_06813

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235362	1e-124	AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020231534.1	0.0	protein ALWAYS EARLY 2
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A151U4Y7	0.0	A0A151U4Y7_CAJCA; Lin-9 isogeny
STRING	GLYMA10G29481.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]