PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_06954
Common NameKK1_007153
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 297aa    MW: 31912.1 Da    PI: 5.6589
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_06954genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.7e-09147191554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  C.cajan_06954 147 HSIAERLRRERIAERMKALQELVPSiN------KTDRAAMLDEIVDYVKFL 191
                    99***********************77......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-15140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-11140196No hitNo description
PROSITE profilePS5088816.126142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14144202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-7147191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-11148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAGNSSEGLG DDFLEQILAV PEAPVGYVGR NVVSDVGVLQ LGFRPLGLNL EQSGFVRQQQ  60
QEDLNSTSSS ASSTDMRGLF SAFGQMHSPT LAPSVRPTLP PHPQLHLHQQ AFQGQAAAGP  120
ASMGATPQPP GIRPRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP SINKTDRAAM  180
LDEIVDYVKF LRLQVKVLSM SRLGGAGAVA QLVADVPLSA VEGEDIEGGG NEQAWDKWSN  240
DGTEQQVAKL MEEDVGAAMQ FLQSKALCIM PISLASAIFR MPQSEASTGI KPESNSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_06954
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1416381e-175BT141638.1 Lotus japonicus clone JCVI-FLLj-6C12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237065.10.0transcription factor UNE12 isoform X2
SwissprotO227682e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A151U5C00.0A0A151U5C0_CAJCA; Transcription factor UNE12
STRINGXP_007144828.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]