PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07243
Common NameKK1_007445
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 217aa    MW: 23632.2 Da    PI: 6.8668
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07243genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.31.1e-42641631100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+
  C.cajan_07243  64 PCAACKILRRRCVEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAK 159
                    7**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    +++e
  C.cajan_07243 160 AQAE 163
                    9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.94563164IPR004883Lateral organ boundaries, LOB
PfamPF031959.0E-4364161IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEYKVKTTTT SPPIPIHVPT MLSNSPPSSS SSPPSQSHTP FPSPSQGSPP AAPPSPPPPV  60
VVSPCAACKI LRRRCVEKCV LAPYFPPTDP IKFTIAHRVF GASNIIKFLQ ELPESQRADA  120
VSSMVYEANA RIRDPVYGCA GAICQLQKQV SELQAQLAKA QAEVVNMQCQ QANLVALICM  180
EMSQSQDQNM LQPQPHVDMS CFIEDNTFGT AWEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-43551712118LOB family transfactor Ramosa2.1
5ly0_B4e-43551712118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07243
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991130.0BT099113.1 Soybean clone JCVI-FLGm-13B15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208327.11e-158LOB domain-containing protein 1
SwissprotQ9LQR01e-76LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A151U6371e-157A0A151U637_CAJCA; LOB domain-containing protein 1
STRINGGLYMA20G31780.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-65LOB domain-containing protein 1