PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_07275

Common Name

KK1_007478

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Nin-like

Protein Properties

Length: 802aa MW: 89732.4 Da PI: 5.8867

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_07275	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.8e-29	563	613	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ C.cajan_07275 563 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 613 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	552	633	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-25	566	613	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-24	705	792	No hit	No description
PROSITE profile	PS51745	25.465	707	789	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.5E-27	707	788	No hit	No description
SMART	SM00666	1.7E-27	707	789	IPR000270	PB1 domain
Pfam	PF00564	2.7E-19	707	788	IPR000270	PB1 domain
CDD	cd06407	3.84E-38	708	788	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MSESEEENPD CVPRSKAEEE GGCNMDFDLE LESSWPLDHM SFVSNPMSPF LFSNTSDQPY 60 SPLWAFSDGE DERHPRFPAS AFSDCHKIFS CDSNSVAEKP VENDDHKKLL PPLVPMPPVD 120 TLDGYCVIKE RMTQALRYFK ELTELNVLAQ VWAPVRNGNR FVLTTSGQPF VLDPHSNGLN 180 QYRTVSLMYM FSVDGENDGS LGLPGRVFQQ KLPEWTPNVL YYSSKEYPRR DYAQHYNVRG 240 TLALPVFEPS MQSCLGVLEL IMTSPKINYA PEVDKICKAL ETVNLRSSEI LDQPYNITLA 300 MLLNQICNEG RQNALSEILE ILTVVCETHN LPLAQTWIPC RHRSVLAQGG GLKKSCSSFD 360 GSCMGKVCMS TTDIAFYIID AHLWGFRDAC VEHHLQQGQG VAGRAFLSHN MCFCSNITQF 420 CKTDYPLVHY ALMFGLTSCF AICLRSSHTG NDDYVLEFFL PPRVTDFHEQ KTLLGSILAS 480 VKQHFQSLKI ASGVELEDCS IEIVEATIER VHTRFESIPI APSIKSPTRH DTSPNMGRNI 540 EHIPSLEAKN IKKPSERKRG KTEKSISLEV LQRYFAGSLK DAAKSLGVCP TTMKRICRQH 600 GISRWPSRKI NKVNRSLSKL KRVIESVQGA EGAFGLNSLS PSPLPIAVGS FPEPFPYPMP 660 DFASTELQEP FGGMLIEDAG LDLSPKQSMD TPNKAVTPFA ARKEMKTVTI KATYREDIIR 720 FRVPLTCGIV ELKEEVAKRL KLEVGTFDIK YLDDDHEWVL IACDADLQEC MDVSRSSGSN 780 IIRVLVHDIT SNLGSSCESS GE

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MSESEEENPD CVPRSKAEEE GGCNMDFDLE LESSWPLDHM SFVSNPMSPF LFSNTSDQPY  60
SPLWAFSDGE DERHPRFPAS AFSDCHKIFS CDSNSVAEKP VENDDHKKLL PPLVPMPPVD  120
TLDGYCVIKE RMTQALRYFK ELTELNVLAQ VWAPVRNGNR FVLTTSGQPF VLDPHSNGLN  180
QYRTVSLMYM FSVDGENDGS LGLPGRVFQQ KLPEWTPNVL YYSSKEYPRR DYAQHYNVRG  240
TLALPVFEPS MQSCLGVLEL IMTSPKINYA PEVDKICKAL ETVNLRSSEI LDQPYNITLA  300
MLLNQICNEG RQNALSEILE ILTVVCETHN LPLAQTWIPC RHRSVLAQGG GLKKSCSSFD  360
GSCMGKVCMS TTDIAFYIID AHLWGFRDAC VEHHLQQGQG VAGRAFLSHN MCFCSNITQF  420
CKTDYPLVHY ALMFGLTSCF AICLRSSHTG NDDYVLEFFL PPRVTDFHEQ KTLLGSILAS  480
VKQHFQSLKI ASGVELEDCS IEIVEATIER VHTRFESIPI APSIKSPTRH DTSPNMGRNI  540
EHIPSLEAKN IKKPSERKRG KTEKSISLEV LQRYFAGSLK DAAKSLGVCP TTMKRICRQH  600
GISRWPSRKI NKVNRSLSKL KRVIESVQGA EGAFGLNSLS PSPLPIAVGS FPEPFPYPMP  660
DFASTELQEP FGGMLIEDAG LDLSPKQSMD TPNKAVTPFA ARKEMKTVTI KATYREDIIR  720
FRVPLTCGIV ELKEEVAKRL KLEVGTFDIK YLDDDHEWVL IACDADLQEC MDVSRSSGSN  780
IIRVLVHDIT SNLGSSCESS GE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_07275

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020234906.1	0.0	protein NLP7 isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A151U636	0.0	A0A151U636_CAJCA; Uncharacterized protein
STRING	GLYMA20G29960.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]