PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07385
Common NameKK1_007588
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 251aa    MW: 28297.1 Da    PI: 9.593
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07385genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.3e-35221122101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y++++d++++++isw+++g+sf+v+++  fa++ LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF++g+k+ll++i
  C.cajan_07385  22 FLAKTYHLVDDHTTDHVISWNHTGSSFIVWNTAVFATDFLPKYFKHNNFSSFVRQLNTYGFRKVVPHR---------WEFSNDSFRRGHKRLLCEI 108
                    9****************************************************************999.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  C.cajan_07385 109 QRRK 112
                    **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3615106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5318111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.66E-3319111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MPPPLQRNNA HSTTLRSLPT PFLAKTYHLV DDHTTDHVIS WNHTGSSFIV WNTAVFATDF  60
LPKYFKHNNF SSFVRQLNTY GFRKVVPHRW EFSNDSFRRG HKRLLCEIQR RKILSPSPPL  120
PAIPIVSPSN SSPAALLDEN ERLRKENVLL TKELEEMKSL CNNIFNLMSN YANGQADGGA  180
AAAKTLGLMP AKRCSGEEEM NPKLFGVAIG TKRGREEYDR VLSVDDGSFY VEVKSEPLDL  240
ARHGENRKSG G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-232211129129Heat shock factor protein 1
5d5v_B9e-232211129129Heat shock factor protein 1
5d5v_D9e-232211129129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07385
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352302e-56AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209636.10.0heat stress transcription factor B-2a
SwissprotQ9SCW43e-73HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A151U6F50.0A0A151U6F5_CAJCA; Heat stress transcription factor B-2a
STRINGXP_007143381.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.17e-68heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]