PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07427
Common NameKK1_007634
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26437.5 Da    PI: 9.1185
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07427genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.5e-30959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   +ri nk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl+ yss
  C.cajan_07427  9 ERIHNKINRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSS 59
                   69***********************************************96 PP
2K-box65.71.6e-221001821597
          K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      l+qel  L++++e+Lqr+qR+l Ge+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el  k ++l++ nk+L++k
  C.cajan_07427 100 HCLYQELLILRSKYESLQRTQRNLTGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLTSRIDELHGKVHNLEQVNKQLESK 182
                    5689****************************************************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.258161IPR002100Transcription factor, MADS-box
CDDcd002652.98E-39272No hitNo description
SuperFamilySSF554553.14E-31273IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.61799193IPR002487Transcription factor, K-box
PfamPF014866.4E-20101182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKVVLER IHNKINRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSS RGKLFQYSST  60
DISRIIEKYR QCCFDMSQTG DIAEHRSQQR FIISNNCALH CLYQELLILR SKYESLQRTQ  120
RNLTGEELEP LSMKELHSLE KQLDRTLAQA RKHLTQKLTS RIDELHGKVH NLEQVNKQLE  180
SKERGKCTQI CESSANNDIW LHDAHVNQFE YGTTRCVLLF TLVLLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-24171171MEF2C
5f28_B4e-24171171MEF2C
5f28_C4e-24171171MEF2C
5f28_D4e-24171171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07427
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987531e-87BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237632.11e-141MADS-box transcription factor 17 isoform X1
SwissprotQ7XUN21e-60MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A151U6J41e-165A0A151U6J4_CAJCA; MADS-box transcription factor 17
STRINGGLYMA20G29250.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-54MIKC_MADS family protein
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]