PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07605
Common NameKK1_007813
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 340aa    MW: 37513.9 Da    PI: 8.1641
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07605genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.62.7e-15256281126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +ktelC+ +++tGtC+yGd C+FaHg
  C.cajan_07605 256 FKTELCNKWQETGTCPYGDHCQFAHG 281
                    79***********************8 PP
2zf-CCCH18.43.8e-06294318125
                    --S---SGGGGTS.--TTTTT-SS-S CS
        zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                    ykte Cr  ++ G  C+yG rC+F H
  C.cajan_07605 294 YKTEVCRMVLA-GvVCPYGHRCHFRH 318
                    9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-19251288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-11252287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004255283IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9255282IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-12256281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-8289323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-11289322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803293321IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4293320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MHNKDACSPS ANGGFGAVTA GQISSPGGVY SSLYSALSND SIASLSANGG GVSLYPYSES  60
TQYDSGVIQK HQDMVNRHSM CLSRLVETSK EVEALRQENG QLRAANKELQ KQLHLVIQAS  120
LENHFRGLHI GEGKENCADW NNNNNNINNS HNNMNSNGNK ELQEISDESP TSVIENNVVE  180
VERFSLPKSI SVRSNGYLKM AQSAALAANN NASRNKGATR PRTSATPPEA VQKVYVRGGQ  240
KEEEPLEMVV YNQGMFKTEL CNKWQETGTC PYGDHCQFAH GIGELRPVIR HPRYKTEVCR  300
MVLAGVVCPY GHRCHFRHAL TEQEKAVVSQ PKPRTMKLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22256322470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07605
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-149AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126497.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-86C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A151U7450.0A0A151U745_CAJCA; Zinc finger CCCH domain-containing protein 15
STRINGXP_007142975.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-84C3H family protein