PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07680
Common NameKK1_007868, KK1_007891
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 87aa    MW: 9886.2 Da    PI: 9.6332
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07680genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.7e-101558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   + + +a +++ ++   +W+ Ia+ +g g++++++k ++
    C.cajan_07680 15 SWTPKQNKVFEKALAMHDKDtpdRWHNIAKAVG-GKSAEEVKRHY 58
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-51062IPR009057Homeodomain-like
PROSITE profilePS5129310.7231166IPR017884SANT domain
SMARTSM007175.2E-81264IPR001005SANT/Myb domain
SuperFamilySSF466892.11E-131470IPR009057Homeodomain-like
PfamPF002495.2E-81558IPR001005SANT/Myb domain
CDDcd001676.29E-81562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MASSTLGKQK VFDSSWTPKQ NKVFEKALAM HDKDTPDRWH NIAKAVGGKS AEEVKRHYEI  60
LLEDLRHIES GHVPIPNYRS PSTSFPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-3016801175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209319.15e-60protein RADIALIS-like 3
RefseqXP_020210369.15e-60protein RADIALIS-like 3
SwissprotQ1A1733e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A151U7A21e-58A0A151U7A2_CAJCA; Uncharacterized protein
STRINGGLYMA04G01410.21e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-36RAD-like 6