PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_07789

Common Name

KK1_008014

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 180aa MW: 19804.8 Da PI: 8.7966

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_07789	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.1	3.2e-29	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C+l+ ++ p+ q++++ +v+k+FG++ ++++l+++p ++r+++++sl+yeA r+ +Pv+Gavg++++++++l+q+ C.cajan_07789 2 SCNGCRVLRKGCSEECMLRHCLqwienPQGQAHATLFVAKFFGRAALMSFLSSVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWHLCQMG 97 6*********************************************************************************************98 PP DUF260 92 aela 95 +e + C.cajan_07789 98 VEKV 101 8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.437	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-26	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MSCNGCRVLR KGCSEECMLR HCLQWIENPQ GQAHATLFVA KFFGRAALMS FLSSVPANQR 60 SALFQSLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK VLRGGASLTP LPHFLGAHQQ 120 NQVTDVETVM LGGATCHQLK KPRVGTRTPS EESETSTLRS RAEDCAPHAQ SQRKLLPLFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_07789

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235177	1e-68	AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020210522.1	1e-132	LOB domain-containing protein 38
Swissprot	Q9SN23	1e-59	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A151U7M2	1e-131	A0A151U7M2_CAJCA; LOB domain-containing protein 38
STRING	XP_007143107.1	4e-96	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-61	LOB domain-containing protein 38