PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_07807
Common NameKK1_008034
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 135aa    MW: 15099.2 Da    PI: 10.084
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_07807genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.31.8e-2032121198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ff vl+ s+v+ ++ +v+p kf++++ + +++s ++ l+ ++gr+W+v++  r+++    + +GW++F+++n+LkegD++ F l+++++  + v++
  C.cajan_07807  32 FFIVLKASYVNGHS-VVIPSKFVKKYLK-EKRSDDILLRVLDGRTWTVNF--RNGR----FCAGWNKFASDNHLKEGDVCAFGLTKSQGHCFEVTI 119
                    88999999999998.***********44.45778****************..8888....789********************9965444446666 PP

                    E- CS
             B3  97 fr 98 
                    +r
  C.cajan_07807 120 IR 121
                    65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-2425122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2226123IPR015300DNA-binding pseudobarrel domain
CDDcd100178.99E-2430121No hitNo description
PROSITE profilePS5086313.05631123IPR003340B3 DNA binding domain
SMARTSM010194.0E-1532123IPR003340B3 DNA binding domain
PfamPF023627.6E-1832120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MGEDRGGATK SVKVEQVTSK VVETSRSKAP SFFIVLKASY VNGHSVVIPS KFVKKYLKEK  60
RSDDILLRVL DGRTWTVNFR NGRFCAGWNK FASDNHLKEG DVCAFGLTKS QGHCFEVTII  120
RISEETHLSG NNSWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_07807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029128933.14e-87B3 domain-containing transcription factor VRN1
RefseqXP_029128935.14e-87B3 domain-containing transcription factor VRN1
RefseqXP_029128937.14e-87B3 domain-containing transcription factor VRN1
TrEMBLA0A151U7N38e-95A0A151U7N3_CAJCA; B3 domain-containing protein REM19
STRINGXP_007143081.17e-27(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.18e-13related to vernalization1 1