PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08002
Common NameKK1_008245
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family RAV
Protein Properties Length: 323aa    MW: 37281.6 Da    PI: 6.2472
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08002genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.15e-092874254
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                   ++kGV    ++g W A+I+       + +r++lg+f ++ eAa a++ a  kl+
  C.cajan_08002 28 KFKGVV-PQQNGNWGAQIYA------NhQRIWLGTFKSEREAAMAYDSATIKLR 74
                   799996.666999****999......44**********99********999887 PP
2B3841.4e-26147231182
                    EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                    f+k+ltpsdv+k++rlv+pkk+a ++    +++  +++++++d+  r W+++++y+k+s++yv+t+GW++Fvk+ +Lk++D+v F
  C.cajan_08002 147 FQKELTPSDVGKLNRLVIPKKHAVTYfpyANDESVDMEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDRKLKAKDVVAF 231
                    99***************************7777889***********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-172889IPR001471AP2/ERF domain
CDDcd000181.39E-202885No hitNo description
PROSITE profilePS5103216.2392883IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-162883IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-142885IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.102.9E-30144232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-27145237IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-24146231No hitNo description
PfamPF023629.6E-24147231IPR003340B3 DNA binding domain
SMARTSM010198.7E-17147248IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647147254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MESSSGSSEI MFALDAAKRA RHEENVHKFK GVVPQQNGNW GAQIYANHQR IWLGTFKSER  60
EAAMAYDSAT IKLRSGECHR NFPWNDQTVQ EPKFQSHYSA ETVLSMIRDG TYPSNFATFL  120
STHQPQQSLA KHISLKGDEQ FCCTQLFQKE LTPSDVGKLN RLVIPKKHAV TYFPYANDES  180
VDMEVVFYDK LMRLWKFRYC YWKSSQSYVF TRGWNRFVKD RKLKAKDVVA FFICEPMSWA  240
KGEAFSMIDV VYNNNNNNNN NAVDHERSQC FGESKKDTKQ ILGCEDEDED EDEDEDENEN  300
RDGNIGKDLS SQKGLRLFGV CIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-2714623113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233495.20.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-92RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A151U8560.0A0A151U856_CAJCA; AP2/ERF and B3 domain-containing transcription factor At1g51120 family
STRINGGLYMA20G39140.21e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.19e-95RAV family protein