PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08004
Common NameKK1_008247
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 153aa    MW: 15957.1 Da    PI: 9.9229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08004genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-12120144126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC +fa+ G C +G+rC+FaHg
  C.cajan_08004 120 FKTKLCENFAK-GSCTFGERCHFAHG 144
                    69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547916.43E-161697IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.3E-162596IPR004088K Homology domain, type 1
SMARTSM003222.8E-112595IPR004087K Homology domain
PROSITE profilePS5008413.9842690IPR004088K Homology domain, type 1
PfamPF000131.4E-112892IPR004088K Homology domain, type 1
CDDcd001057.22E-133091No hitNo description
Gene3DG3DSA:4.10.1000.101.7E-17115151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.83E-9118150IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.633119146IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9120144IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MQSRRVGGRI EPPIPAHGAA GGFGASATAK ISINASLAGA VIGKNGVNSK QICRATGAKL  60
SIRDHDSDPN LRNIELEGSF DQIKQASAMV HELILNVSSA SGPPMKSITT QSSAAPSNNF  120
KTKLCENFAK GSCTFGERCH FAHGADELRK PGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943711e-172BT094371.1 Soybean clone JCVI-FLGm-18H5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020236561.11e-106zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ37e-56C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A151U8A71e-107A0A151U8A7_CAJCA; Zinc finger CCCH domain-containing protein 44
STRINGXP_004497409.11e-84(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-48C3H family protein