PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08009
Common NameKK1_008252
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 283aa    MW: 30441 Da    PI: 8.3813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08009genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11213258655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  C.cajan_08009 213 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 258
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-14210266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-11211262No hitNo description
Gene3DG3DSA:4.10.280.101.0E-11212263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-12213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8213258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MYPSSSSSSS SSSAQSMSQG LTRYGSAPGS LLTSTVEAVI GGGGGSRPYY SGDSSESTCK  60
EQRSYDAHAH SYGSGSALLR QKSSPAGFLS HLAATATATT TPNHIHSGFT ITRPSQLSFT  120
PHCQDSENSA TTSFGIGMEA WDNSIAFSAP PTKRSKTTND PDILHCLNAL ESQFSLPQTS  180
LEMATVENML RIPEDSVPCK IRAKRGCATH PRSIAERERR TRISGKLKKL QDLVPNMDKQ  240
TSYADMLDLA VQHIKGLQTQ VQVCITTLPI HHNNFFISPS VNI
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202244.10.0transcription factor bHLH128
SwissprotQ8H1024e-58BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A151U8960.0A0A151U896_CAJCA; Transcription factor bHLH128 family
STRINGXP_007142611.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.16e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]