PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08118
Common NameKK1_008362
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 231aa    MW: 26904.5 Da    PI: 6.7292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08118genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.3e-142721894
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                   +p+kf++++gg    +  + ++ ++g +Wev+     k g+++l+kGWk+Fv+   L++g  + F+++g+s     v
  C.cajan_08118  2 IPNKFTRKYGGA--LPNPVFIKPPDGTEWEVYW--VTKNGEVWLEKGWKQFVEHYSLDQGHLIFFEYQGTSHI--DV 72
                   9********988..5556***************..888889*************************9986544..44 PP
2B344.52.8e-14138229499
                    E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     l+p++vl+s    l  + ++ + +kke+ + ++l ++  rsW+vkl  +++ +   l++GW+ F+++n+L+ gD++vF+l++r++  ++v+vf++
  C.cajan_08118 138 FLKPAHVLESY---LAVPDMKGIFEKKEKYVHVKL-QLGERSWNVKLLLSQRFSFGRLSAGWSLFASENELQPGDVCVFELISRDDPVFKVHVFKR 229
                    45666666663...555666677667777766664.4678*******887777778899***********************98888889999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.902178IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-17285IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-12276No hitNo description
Gene3DG3DSA:2.40.330.104.5E-18278IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-12269IPR003340B3 DNA binding domain
SMARTSM010190.0081278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-17130229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-15132229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-14133228No hitNo description
PROSITE profilePS5086311.744134230IPR003340B3 DNA binding domain
SMARTSM010195.0E-9135230IPR003340B3 DNA binding domain
PfamPF023622.5E-11139229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
KIPNKFTRKY GGALPNPVFI KPPDGTEWEV YWVTKNGEVW LEKGWKQFVE HYSLDQGHLI  60
FFEYQGTSHI DVLIHDQSAL EIRYPSSDEK DNLDHTDEEQ MRDEKPSQRA SSLNRPIQTR  120
AREVASSFIS INPFFTVFLK PAHVLESYLA VPDMKGIFEK KEKYVHVKLQ LGERSWNVKL  180
LLSQRFSFGR LSAGWSLFAS ENELQPGDVC VFELISRDDP VFKVHVFKRQ D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1310422818141B3 domain-containing transcription factor VRN1
4i1k_B1e-1310422818141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211028.21e-108LOW QUALITY PROTEIN: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A151TQ281e-170A0A151TQ28_CAJCA; Putative B3 domain-containing protein Os03g0621600 family (Fragment)
STRINGGLYMA20G24268.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.19e-19B3 family protein