PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08122
Common NameKK1_008366
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 260aa    MW: 30446.2 Da    PI: 9.5204
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08122genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.9e-20149243197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ff  ++++++ ++  l +p++f+++ ++++     ++l +++g+sW vk++ +++sg+++l++ Wk+Fv++ngLk+g ++vF+ +++ + +++v +
  C.cajan_08122 149 FFIREMHPSYINNYFLAMPRNFITAEELEEYD--SIILWNSEGKSWHVKFSLNRSSGQIFLKGRWKNFVEDNGLKVGNVCVFEQMQKLGISFRVFI 242
                    556667788888888********999988666..5************************************************6665444455555 PP

                    E CS
             B3  97 f 97 
                    f
  C.cajan_08122 243 F 243
                    5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.616190IPR003340B3 DNA binding domain
SMARTSM010190.0051690IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-15790IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-71186IPR003340B3 DNA binding domain
CDDcd100171.75E-81188No hitNo description
Gene3DG3DSA:2.40.330.104.5E-131190IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-22142244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-23144246IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-17148244No hitNo description
PROSITE profilePS5086315.058149246IPR003340B3 DNA binding domain
PfamPF023622.6E-17149244IPR003340B3 DNA binding domain
SMARTSM010198.2E-11150246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSYTMLTKSL WQRIPRNFVN KCWEGISNPI LLLLPNGAKW EINWKTLDAD VWLVDNWKKF  60
VLFYSLDQNH LLVFRYVGMS RFQVVILNQS GLEIGYPLME ETLHGRKRIM DADSRCLKSK  120
AIQREKLLEK SESSVALRSA MAFHSENPFF IREMHPSYIN NYFLAMPRNF ITAEELEEYD  180
SIILWNSEGK SWHVKFSLNR SSGQIFLKGR WKNFVEDNGL KVGNVCVFEQ MQKLGISFRV  240
FIFRNPEESN PGPSMLSGKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211029.21e-152B3 domain-containing transcription factor VRN1-like
TrEMBLA0A151TQ630.0A0A151TQ63_CAJCA; B3 domain-containing protein REM9
STRINGGLYMA20G24211.11e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-16B3 family protein