PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_08170

Common Name

KK1_008415

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

TCP

Protein Properties

Length: 234aa MW: 25089.2 Da PI: 10.5909

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_08170	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.4	7.3e-40	13	196	2	120
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a++++ + s+ s+s+++++ C.cajan_08170 13 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFSSVSLSVRSSSTDHKPqllaptpfi 108 78*****************************************************************777444444444444444677888899 PP TCP 89 ........................................................kaaksaakskksqksaasalnlakesrakara 120 + a+ + +++++q+++++a+ +a+++r++++a C.cajan_08170 109 lgkrirtdedsskdeavsvgpslvgpstppglwalparpdfgqiwsfaaaapemvvQPAAVSVSQQQQQQQQQQASLFAHHHRQQQQA 196 999999999999999**************************************955555555666666666668888888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-35	19	184	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	19	73	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSTSDATTNQ PLAVKKPPSK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE 60 WLLRQAEPSI IAATGTGTTP ATFSSVSLSV RSSSTDHKPQ LLAPTPFILG KRIRTDEDSS 120 KDEAVSVGPS LVGPSTPPGL WALPARPDFG QIWSFAAAAP EMVVQPAAVS VSQQQQQQQQ 180 QQASLFAHHH RQQQQAIGEA SAARVGNYLP GHLNLLASLS GGPGNSGRRD DEPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_08170

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	1e-87	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	1e-87	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	1e-87	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-87	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020212067.1	1e-169	transcription factor TCP7
Swissprot	Q9FMX2	2e-95	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A151TQB4	1e-168	A0A151TQB4_CAJCA; Transcription factor TCP7
STRING	GLYMA10G43190.1	1e-136	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-81	TCP family protein