PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_08411

Common Name

KK1_008659

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 187aa MW: 20199.2 Da PI: 8.3618

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_08411	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.8	6.7e-42	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++ C.cajan_08411 13 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNA 108 7*********************************************************************************************** PP DUF260 97 lkee 100 +++e C.cajan_08411 109 VRAE 112 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.671	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-42	13	110	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MLGPPGTLNT ITPCAACKLL RRRCAQECPF SPYFSPHEPQ KFASVHKVFG ASNVSKMLME 60 VPECQRADAA NSLVYEANVR LRDPVYGCMG AISALQQQVQ SLQAELNAVR AEILKYKLRE 120 ANMIPSSHVA MLPSSGVVSI AAPPPPPPPP PPPPSLPPNS SSSSMYIQQR DPTSYTTLSS 180 DNISYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	5	127	3	125	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	5	127	3	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_08411

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-123	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020213611.1	1e-134	LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-73	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A151TQY9	1e-133	A0A151TQY9_CAJCA; LOB domain-containing protein 15
STRING	GLYMA04G39830.2	1e-110	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	7e-74	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]