PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08643
Common NameKK1_008896
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 237aa    MW: 25194.9 Da    PI: 9.2099
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08643genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.33.6e-264107199
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlrr+C+++C+++  +     p++q++++ +++k++G++ +l+ll++++++ ++++++sl+yeA+ r+ +P+ G++g++++++++l++++
  C.cajan_08643   4 SCNGCRVLRRGCTPECPIRTSLqwihsPNSQSNATLFLAKFYGRQGLLNLLTTASTHLQPAVFKSLLYEACGRMVNPIFGSTGLLSSGNWHLCEEA 99 
                    6**********************************************************************************************9 PP

         DUF260  92 aelallke 99 
                    ++++l ++
  C.cajan_08643 100 VKAVLSGA 107
                    99887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.3393109IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-214102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRLSCNGCRV LRRGCTPECP IRTSLQWIHS PNSQSNATLF LAKFYGRQGL LNLLTTASTH  60
LQPAVFKSLL YEACGRMVNP IFGSTGLLSS GNWHLCEEAV KAVLSGAPIQ QAPLDGAASL  120
QLEACDIRHV AKGDKSCGSD GLHKVKSRTS KFKRRALKPT VDSAVAELAR SELNGSVSRE  180
SGSGVTRTSE ADSGSVGSVG PVRAADGEME LELTLGWGSM KRPMVPVMPR VGLDLSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08643
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212783.11e-174LOB domain-containing protein 41
TrEMBLA0A151TRL51e-172A0A151TRL5_CAJCA; LOB domain-containing protein 41
STRINGGLYMA07G10180.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1818944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-62LOB domain-containing protein 41