PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_08718

Common Name

KK1_008973

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bHLH

Protein Properties

Length: 338aa MW: 36957.8 Da PI: 6.8914

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_08718	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.1	5.1e-16	47	96	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq C.cajan_08718 47 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 96 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-18	43	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-23	44	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.044	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.67E-15	47	100	No hit	No description
Pfam	PF00010	2.3E-13	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-12	51	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MRTGKGNQEE DEYEEEDFGS SKKQGTSSAS NTNKADGKAI DKASAIRSKH SVTEQRRRSK 60 INERFQILRD LIPHSDQKRD TASFLLEVIE YVQYLQEKVQ KYEGSYQGWG QEPSKLMPWR 120 NSHWRVQSFA GQPTGIKNGL GPVSPFPGKF DESSVNLSPT MLSGTQTTID ADQSRDIVSK 180 TAERQPDLAS KGIPLPVAMP MHANMSVPVR SDGVLAHPLQ GTVSDAQSTE CPTTSEPQNQ 240 QDELTVEGGT ISISSAYSQG LLNNLTQALQ SAGLDLSQAS ISVQINLGKR ANKGLNCGTS 300 SPKNHDNPSS NNQTLAHFRD TGSGEDSDQA QKRMKTYK

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_08718

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093538	0.0	BT093538.1 Soybean clone JCVI-FLGm-24O13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020213669.1	0.0	transcription factor BIM2 isoform X1
Refseq	XP_020213670.1	0.0	transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	1e-120	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A151TRW5	0.0	A0A151TRW5_CAJCA; Transcription factor BIM2
STRING	GLYMA02G13670.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-116	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]