PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_08998

Common Name

KK1_009257

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

ZF-HD

Protein Properties

Length: 267aa MW: 29555.7 Da PI: 6.2608

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_08998	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.3	5.8e-31	63	119	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eC+kNhA+s+GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + C.cajan_08998 63 TTVRYRECQKNHAVSIGGHAVDGCCEFLAA-GEEGTLEAVICAACNCHRNFHRKEIDG 119 689************************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.4E-28	65	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-20	66	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-26	66	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.997	67	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	9.56E-20	191	265	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-31	194	266	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.1E-25	204	260	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEFDEHEDQE EEEEEEEEEE EEEMGFSVAP PGYDSLGNTP LRSKVTAAEG AASARKGVSA 60 GTTTVRYREC QKNHAVSIGG HAVDGCCEFL AAGEEGTLEA VICAACNCHR NFHRKEIDGE 120 ISPYHQQPRS QPQYHHQFSP YYHRGPPHAG AGYLHHPLVT PPVSQHRPLA LPPLASGGVF 180 SREEEDMSNP SSSGGGVGGG SGTKKRFRTK FTQEQKDKML AFAEKLGWRI QKHDEAAVEQ 240 FCAENSVKRH VLKVWMHNNK HTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-29	203	262	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_08998

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-140	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020212351.1	0.0	zinc-finger homeodomain protein 2 isoform X3
Swissprot	A2Z259	3e-74	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	2e-74	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
Swissprot	Q9SB61	8e-75	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A151TSL6	0.0	A0A151TSL6_CAJCA; ZF-HD homeobox protein At4g24660 family
STRING	XP_007136351.1	1e-136	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-70	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]