PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_09226
Common NameKK1_009486
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 190aa    MW: 21807.8 Da    PI: 9.4711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_09226genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18754253
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                   +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  C.cajan_09226  7 RYRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54
                   69******9.**********8.....556*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.72E-34666No hitNo description
SMARTSM003801.7E-41770IPR001471AP2/ERF domain
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-34764IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-21766IPR016177DNA-binding domain
PfamPF008471.1E-11755IPR001471AP2/ERF domain
PRINTSPR003673.1E-11819IPR001471AP2/ERF domain
PRINTSPR003673.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MARSQQRYRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGTRAR  60
TNFPYNPNAS QSSSSKLLSA TLTAKLHRCY MASLQMTRPS LPEPQRVASP HVITSGSNFP  120
MKSNETERML PQKRQEEKQE AEGNWVLKKV KVESAQQFKP LEEDHIEQMI EELLHYGSIE  180
LCSVIPPQAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18871670ATERF1
3gcc_A2e-18871670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for all lupin cells independent of the respective tissue.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_09226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1419541e-103BT141954.1 Medicago truncatula clone JCVI-FLMt-6M2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213776.11e-141protein PPLZ02
SwissprotP161467e-79PZ02_LUPPO; Protein PPLZ02
SwissprotQ94AW51e-78ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A151TTD71e-140A0A151TTD7_CAJCA; Protein PPLZ02
STRINGXP_007136971.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-58ERF family protein
Publications ? help Back to Top
  1. Perrey R,Warskulat U,Wink M
    Molecular cloning of a lupin-specific gene from a cDNA library of suspension-cultured cells of Lupinus polyphyllus.
    Plant Mol. Biol., 1990. 15(1): p. 175-6
    [PMID:2103434]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]