PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_09311
Common NameKK1_009575
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 270aa    MW: 31333.7 Da    PI: 9.3929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_09311genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-094363526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    C+++++ G C++Gd+C+FaHg
  C.cajan_09311 43 ACPDYRK-GNCNRGDTCQFAHG 63
                   7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.056127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-53767IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-73864IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7093865IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-73965IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-74263IPR000571Zinc finger, CCCH-type
SMARTSM00356277396IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MFEFKVRNCP RGRSHDWTDC PYAHPAEKAR RRDPRKFLYS ATACPDYRKG NCNRGDTCQF  60
AHGVFECWLH PSRYRTQLCN DGTACRRRVC FFAHTTDQLR LLTHSESSSP TSVINSSFSD  120
SPPSSPSPYA SMRNVQLQHS FTRAVFRSPR AALWTVNDCH EEPPMERVES GRDIRARIYA  180
KLSMEXXXXX XXXXXXXXXX XXXXXXXNVQ RHHSFTRAVF RSPRAALWTV NDCHEEPPME  240
RVESGRDIRA RIYAKLSMEN SIRTSARDQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_09311
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029127007.11e-124zinc finger CCCH domain-containing protein 23, partial
SwissprotO823073e-65C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A151TTF90.0A0A151TTF9_CAJCA; Zinc finger CCCH domain-containing protein 23
STRINGGLYMA04G05290.12e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.22e-64C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]