PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_09391

Common Name

KK1_009659

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bHLH

Protein Properties

Length: 177aa MW: 20051.9 Da PI: 9.3171

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_09391	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.4e-13	3	48	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+e+E+rRR+riNs ++ Lr+llP + K +Ka+ L k+v+ +k+L C.cajan_09391 3 NHKEAEKRRRERINSHLDHLRTLLPCN-----SKTDKASLLAKVVQRVKEL 48 7***********************8.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.142	1	48	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-14	3	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.78E-11	3	51	No hit	No description
Pfam	PF00010	5.3E-11	3	48	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-14	3	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-12	5	54	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	8.9E-5	90	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MNNHKEAEKR RRERINSHLD HLRTLLPCNS KTDKASLLAK VVQRVKELKQ QTSQITDLET 60 VPSETDEITV LSTGTDYEAG GEGRLIFKAS LCCEDRSDLI PDLIEILNSL HLKTLKAEMA 120 TLGGRTRNVL VVAADKEHSI ESIHFLQNSL KSLLDRSTPT DRSKRRRGLD RRLMPLT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_09391

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020213588.1	1e-125	transcription factor bHLH106
Swissprot	Q9LET0	5e-70	BH107_ARATH; Putative transcription factor bHLH107
TrEMBL	A0A151TTN4	1e-124	A0A151TTN4_CAJCA; Putative transcription factor bHLH107 family
STRING	GLYMA19G30910.1	1e-109	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6672	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	2e-70	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]