PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_09911

Common Name

KK1_010195

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HD-ZIP

Protein Properties

Length: 251aa MW: 29691.4 Da PI: 6.5175

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_09911	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	87	141	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q+e Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k C.cajan_09911 87 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 141 57788*************************************************9 PP
2	HD-ZIP_I/II	118.3	4.1e-38	87	178	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+kqlE+ y++Lk++yd +++e+++L++ev +L++ l+ C.cajan_09911 87 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKHQYDVISDEKQKLQEEVMKLKAMLS 178 69**************************************************************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.44E-19	65	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.783	83	143	IPR001356	Homeobox domain
SMART	SM00389	1.0E-16	85	147	IPR001356	Homeobox domain
CDD	cd00086	1.02E-15	86	144	No hit	No description
Pfam	PF00046	7.7E-16	87	141	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-19	89	150	IPR009057	Homeodomain-like
PRINTS	PR00031	8.9E-5	114	123	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	118	141	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.9E-5	123	139	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.4E-9	143	177	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEFKERDQDR KLETDMDWHH NTKLPYVPRP DSSLSFFYNC NNDNNPYPEF TFILLYQLAF 60 LFHSSCLLVS HMNEQMSVPT KDNGNKEKKK RLTNNQIELL ERSFQEEIKL DPERKMKLSR 120 ELGLQPRQIA VWFQNRRTRW KAKQLEHLYD VLKHQYDVIS DEKQKLQEEV MKLKAMLSRE 180 QGFGNQTYGG YTEISGEETV ESTSEGLRVS NTARGKSTIE QVADQVYSPF TVEDYNNTVT 240 LPHCHWPVVP Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRTRWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_09911

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020213866.1	1e-164	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	9e-48	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A151TV66	0.0	A0A151TV66_CAJCA; Putative homeobox-leucine zipper protein ATHB-51
STRING	GLYMA03G34710.2	1e-120	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	5e-45	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]