PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10587
Common NameKK1_010895
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 658aa    MW: 73444.1 Da    PI: 7.3168
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10587genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.75.9e-25118219199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+ltpsd++++g +++pk++a+e+         + +  ++++ +d +g +W +++iyr++++r++lt+GW+ Fv +++L  gD++vF  +g ++
  C.cajan_10587 118 FSKTLTPSDTSTHGGFSIPKRHADECfrpldmtH-Q-TPAQEIVAKDMHGFEWHFRHIYRGQPKRHLLTSGWSTFVTSKRLVPGDSCVFV-SG-EN 209
                    88****************************9742.3.33459************************************************.33.55 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    +  +v+++r+
  C.cajan_10587 210 GGHRVGIRRA 219
                    5579999986 PP
2Auxin_resp80.15.3e-27245327183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    ++ha++t+++F+v+Y+P++ + eFvv+++++++++  ++s+G+R++ ++e  + + rr++Gt+vg +d+d++rWp+S+Wr+Lk
  C.cajan_10587 245 VSHAIATGTIFTVYYHPWMNPFEFVVPLKHYLNSTVPNYSIGTRVQKHYELVEEPFRRYAGTIVGREDIDSIRWPGSEWRCLK 327
                    679******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-38108229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-33113242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-22117218No hitNo description
PfamPF023627.9E-23118219IPR003340B3 DNA binding domain
SMARTSM010192.4E-23118220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.689118220IPR003340B3 DNA binding domain
PfamPF065076.8E-25245327IPR010525Auxin response factor
PROSITE profilePS5174517.424559642IPR000270PB1 domain
SuperFamilySSF542771.24E-7562635No hitNo description
PfamPF023096.3E-5600638IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MYDCIGVESC DELSRELWRA CAGTPVYIPR DGEKVYYFPQ GHLEQVAAYT QHQQDGQMEI  60
PVFDLPSKIL CRVMYVHLKA EPFTDEVFAQ ITLAPMCKQG DLRLEEEGND GRPKIYSFSK  120
TLTPSDTSTH GGFSIPKRHA DECFRPLDMT HQTPAQEIVA KDMHGFEWHF RHIYRGQPKR  180
HLLTSGWSTF VTSKRLVPGD SCVFVSGENG GHRVGIRRAV NHSHAPPSST LISGHSMQLG  240
ILTNVSHAIA TGTIFTVYYH PWMNPFEFVV PLKHYLNSTV PNYSIGTRVQ KHYELVEEPF  300
RRYAGTIVGR EDIDSIRWPG SEWRCLKVQW DTILDAYNHP ERVCPWWIEP SGSAKETHVP  360
VLPSPKRAHI LNQRPLPGLS GFAMDGAVQN SAKPASQAQR VGRDLQGQDY NGRCSPQPLQ  420
TPPSTDGMRP SKVSASGSRF GKESQNQLPY LIQDPLRKSL GRPKSFAHED LSSSSLSSIG  480
SESLGWPSSE SRNENEVPFD KLGGCSKYKL FGVSLIDRPP ELPSRQFDVF NKFSSLVTSP  540
PMSVASGKTC NKCRSVNNRS CTKVLKLGTA LGRAVDLTRF LGYDELVAEL DSMFDFGGSL  600
INGRSGWHVT CIDDDGDMML LGDYPWQDFL GMVQKMIICP KDGVNNFNPS TSADPPTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1181135717361Auxin response factor 1
4ldw_A1e-1181135717361Auxin response factor 1
4ldw_B1e-1181135717361Auxin response factor 1
4ldx_A1e-1181135717361Auxin response factor 1
4ldx_B1e-1181135717361Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-53AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211911.10.0auxin response factor 2 isoform X1
TrEMBLA0A151TX850.0A0A151TX85_CAJCA; Auxin response factor
STRINGXP_007163052.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-136auxin response factor 1