PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10808
Common NameKK1_011122
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family Whirly
Protein Properties Length: 248aa    MW: 27484.5 Da    PI: 9.858
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10808genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly184.51.9e-57752082137
         Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkve 97 
                    vyk+kaa+++ + +ptf++l+sg+++++r+G+++++++ +++erkydWek+q+falsatev++l+ +++++sceffhdp++ +sn+G+vrk+l+++
  C.cajan_10808  75 VYKGKAAFSLSPCLPTFTKLESGSVVVDRRGTMMMNFMHSIGERKYDWEKRQRFALSATEVGSLITMGPQDSCEFFHDPSMLSSNAGQVRKSLSIK 170
                    9*********************************************************************************************** PP

         Whirly  98 PlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                    P ++  G+fv+l+v n+l++++++fsvP++ aefav++++
  C.cajan_10808 171 PNSN--GYFVSLTVVNNLLNTKDQFSVPITAAEFAVMKTA 208
                    9765..7*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.3E-7265227IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.33E-6066226IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.5E-5675207IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLKLSRVLPL TSTSRHRLLE ALSPRKVEVG DCLRDRPEFT SSSAGISTAA NSYAAKGIAL  60
YKWYTSDRVF APYTVYKGKA AFSLSPCLPT FTKLESGSVV VDRRGTMMMN FMHSIGERKY  120
DWEKRQRFAL SATEVGSLIT MGPQDSCEFF HDPSMLSSNA GQVRKSLSIK PNSNGYFVSL  180
TVVNNLLNTK DQFSVPITAA EFAVMKTACS FALPHIMGWD QITKQQSRGT AGLQPKSGSQ  240
VLDLEWEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A9e-836822510169StWhy2
3n1i_A9e-836822510169protein StWhy2
3n1j_A9e-836822510169Protein StWhy2
3n1k_A9e-836822510169protein StWhy2
3n1l_A9e-836822510169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10808
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0921460.0BT092146.1 Soybean clone JCVI-FLGm-10O7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212560.11e-180single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0342e-86WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A151TXT40.0A0A151TXT4_CAJCA; Uncharacterized protein
STRINGXP_007147230.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-83WHIRLY 2