PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10908
Common NameKK1_011228
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 484aa    MW: 53716.6 Da    PI: 5.6719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10908genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.7e-13313359455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI++Lq
  C.cajan_10908 313 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 359
                    799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-5347229IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.301309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-18312372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.43E-15312363No hitNo description
Gene3DG3DSA:4.10.280.102.9E-18313372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11313359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-17315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MKSVEWDDEE KAMVGAVLGG GALEFLMRNS VWNESVLMAV GSEEGVQNNL SDLVERPNHS  60
NFSWNYAIFW QLSQSKSGDW VLCWGDGCCR EPNEEEVVAV RGRGRVVEEE MHQRMRKRVL  120
QKLHTTFGGS DEDNYAVGLD HVTDTEMFFL ASMYFSFPRG HGGPGKCFAS GNHLWLKSVS  180
DYCVRSFLAK SAGIQTVVLV PTDLGVVELG SVRILPESFQ LLHTVKSLFS THSSNALFTG  240
LAIGDGKVDA GVPIPKVFRE KLAVRKMEDN DRAWGELSDV EASGKEEQPT VADERKPRKR  300
GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AIAYINELQA  360
KVRIMEAERE RFGNTSKDGS VLEGNSSLDN QEKEAPHVDV QAVQDEVIVK VSCPLDAHPL  420
SKVIQTLNEA QINVVESKLA AANDTIFHTF VIKSQGSEQL TKDKLITVFS PTESNSLQPL  480
SSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-30307374269Transcription factor MYC2
5gnj_B3e-30307374269Transcription factor MYC2
5gnj_E3e-30307374269Transcription factor MYC2
5gnj_F3e-30307374269Transcription factor MYC2
5gnj_G3e-30307374269Transcription factor MYC2
5gnj_I3e-30307374269Transcription factor MYC2
5gnj_M3e-30307374269Transcription factor MYC2
5gnj_N3e-30307374269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294302RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10908
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212241.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ21e-106MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A151TY240.0A0A151TY24_CAJCA; Transcription factor bHLH13
STRINGGLYMA03G41901.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-103bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]