PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_10917

Common Name

KK1_011237

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 162aa MW: 18633.3 Da PI: 6.3446

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_10917	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.1	3.3e-34	2	94	8	100
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lrr+C ++C lapyfp ++ +kf vhk+FGasnv+k+++ ++e +reda++++vyeA ar+rdPvyG++g i +lq+ +++lka+l+++k++ C.cajan_10917 2 LRRRCDNNCLLAPYFPTQELHKFVGVHKVFGASNVIKMIQMVEERKREDAVKAMVYEATARLRDPVYGSAGSIYQLQKMIQELKAQLESMKTQ 94 89*************************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.3	1	95	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-34	1	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MLRRRCDNNC LLAPYFPTQE LHKFVGVHKV FGASNVIKMI QMVEERKRED AVKAMVYEAT 60 ARLRDPVYGS AGSIYQLQKM IQELKAQLES MKTQVSELRQ QKELLLSIHN NNVHSHNDPL 120 FTDNDPIFDG YFDQLMDSDP FDFPVQVGWG CSNTNNMSMP SC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-29	1	95	17	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-29	1	95	17	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_10917

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020211803.1	1e-121	LOB domain-containing protein 1
Refseq	XP_020211810.1	1e-121	LOB domain-containing protein 1
Swissprot	Q9SK08	2e-35	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A151TY42	1e-120	A0A151TY42_CAJCA; LOB domain-containing protein 11
STRING	GLYMA19G44645.1	1e-71	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14068	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-37	LOB domain-containing protein 11