PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_10920

Common Name

Dof24, KK1_011240

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 247aa MW: 27106.4 Da PI: 8.4448

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_10920	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.6e-40	12	71	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk+ C.cajan_10920 12 PQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKV 71 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-27	7	70	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	14	70	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.956	16	70	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	18	54	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEEPVSEKKA KPQEQLNCPR CSSTNTKFCY YNNYSLTQPR YFCKTCRRYW TEGGSLRNVP 60 VGGGSRKNKK VIVSSKVPDL NPPSLVSSQN PKMQGVHDLN LAFPAAMDKY HGMSMSPYVE 120 VPKLEIGDST THHHSSSSSS LSALELLQSG MASRGLSPYA ANSMMSGSDS LYQPGYPMHE 180 IKPNLTFSVD GFGNRSYGVQ ENGSGRLLFP FGDIKQLSAG VEVEHNKEQG NNTTGYWTGI 240 IGEGSSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_10920

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662916	0.0	KP662916.1 Cajanus cajan Dof24 (Dof24) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029126985.1	0.0	dof zinc finger protein DOF2.5
Swissprot	Q43385	6e-62	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A0K8K5U8	0.0	A0A0K8K5U8_CAJCA; Dof protein
STRING	XP_007147331.1	1e-135	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	4e-66	Dof family protein

Publications ? help Back to Top
Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]