PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_11422

Common Name

KK1_011751

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WOX

Protein Properties

Length: 351aa MW: 39993.6 Da PI: 7.0077

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_11422	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.9	6.1e-22	79	138	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ C.cajan_11422 79 SRWNPTPEQLRVLEELYRRgTRTPSAEQIQHITAQLrrfgSIEGKNVFYWFQNHKARERQ 138 7***************99************************************97 PP
2	Wus_type_Homeobox	115.7	2.3e-37	78	140	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ+++Leely++G+rtP++e+iq+ita+L+++G ie+kNVfyWFQN+kaRerqk+ C.cajan_11422 78 SSRWNPTPEQLRVLEELYRRGTRTPSAEQIQHITAQLRRFGSIEGKNVFYWFQNHKARERQKR 140 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.1E-5	76	143	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.1E-9	79	138	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-12	79	144	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-19	79	138	IPR001356	Homeobox domain
CDD	cd00086	1.82E-6	80	140	No hit	No description
PROSITE profile	PS50071	11.272	84	139	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MWMVGYNEGG EFNNMVDHSL SGRKLRPLMP RPMTSLNNAT TTTTTPGLTH IHGNDFLSQY 60 HYHHLEQNKR EQLPVVVSSR WNPTPEQLRV LEELYRRGTR TPSAEQIQHI TAQLRRFGSI 120 EGKNVFYWFQ NHKARERQKR RRQMESDAET PEKKDLAASR TVFEAEWTKN WTPSTNCSTI 180 AEESVSTQRT AKAVYAESRT DGWLLFHEGE LQQRRNLLER NATWHVMQLP CPSPAPVTHL 240 INTPPNASAA TTTTTVIATT KMDPNLIKAH DLSFFFTPQR ENSVIHLSSS SSTSEDDNCV 300 ESQTLQLFPL RSGDDGSSDN IKDKDTEIST SAMNANNLTP GQFFEFLPMK D

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MWMVGYNEGG EFNNMVDHSL SGRKLRPLMP RPMTSLNNAT TTTTTPGLTH IHGNDFLSQY  60
HYHHLEQNKR EQLPVVVSSR WNPTPEQLRV LEELYRRGTR TPSAEQIQHI TAQLRRFGSI  120
EGKNVFYWFQ NHKARERQKR RRQMESDAET PEKKDLAASR TVFEAEWTKN WTPSTNCSTI  180
AEESVSTQRT AKAVYAESRT DGWLLFHEGE LQQRRNLLER NATWHVMQLP CPSPAPVTHL  240
INTPPNASAA TTTTTVIATT KMDPNLIKAH DLSFFFTPQR ENSVIHLSSS SSTSEDDNCV  300
ESQTLQLFPL RSGDDGSSDN IKDKDTEIST SAMNANNLTP GQFFEFLPMK D

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_11422

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098409	1e-153	BT098409.1 Soybean clone JCVI-FLGm-16H23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020218120.1	0.0	WUSCHEL-related homeobox 1 isoform X1
TrEMBL	A0A151TEP9	0.0	A0A151TEP9_CAJCA; WUSCHEL-related homeobox 1
STRING	GLYMA07G11372.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2892	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	4e-55	WUSCHEL related homeobox 1