PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11717
Common NameKK1_012070
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ZF-HD
Protein Properties Length: 226aa    MW: 25211.8 Da    PI: 9.9228
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11717genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.92.4e-333794460
    ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60
                     YkeClkNhAas+Ggha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr+++++
  C.cajan_11717 37 SSYKECLKNHAASIGGHALDGCGEFMPSSSSNpTEPRSLTCAACGCHRNFHRRDTQDH 94
                   57**************************99999********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-213390IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-283891IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.0333990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-313990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.24E-20119193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-30123193IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-26132189IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDLTNTHNNT NSQTQPNGSL KHHHPTAVSR PPSTVVSSYK ECLKNHAASI GGHALDGCGE  60
FMPSSSSNPT EPRSLTCAAC GCHRNFHRRD TQDHNPNPNP NPNFISFYHS PPPPPHRGPG  120
PSTSPSPSPI GKKRYRTKFS QEQKEKMQSF SEKLGWRMQK VDEGMLQNFC HEIGVSRGVF  180
KVWMHNNKNS SRKRSLEPLD NKINASATDN NNNNPYNTNA SNHHIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-221331901875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11717
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150434e-60AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217682.11e-129zinc-finger homeodomain protein 9
SwissprotQ9LXG02e-54ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A151TFH01e-166A0A151TFH0_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGXP_007157626.11e-88(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.19e-43homeobox protein 26
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]