PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11858
Common NameKK1_012221
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 273aa    MW: 30373.8 Da    PI: 9.6066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11858genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.5e-071501891255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  C.cajan_11858 150 RREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 189
                    ******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.687138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-5146194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-13150206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-6150193No hitNo description
PfamPF000102.3E-4150189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14151206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDPINAAANT PSYHLSEIWH FPPPAAPDAL GLRSPNFAKK RRQAHHVSAT NAVVRMDLLH  60
CLIFSCRGIE GFKEGQGGGD GKRVKKSETQ SSSGKPAEPA SEPPKQDYIH VRARRGQATD  120
SHSLAERGVM EVSRIYFASR YLVLCAISAR REKISERMKI LQDLVPGCNK VIGKALVLDE  180
IINYIQSLQR QVEFLSMKLE AVNSRMAPGI EVFPPKDLNN FKAHFIPLIL NFDQQTFDTT  240
GMPFVSQAAR EYSRGSSPEW LHMQVGGGFE RAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407543e-52BT140754.1 Medicago truncatula clone JCVI-FLMt-7G3 unknown mRNA.
GenBankBT1432273e-52BT143227.1 Medicago truncatula clone JCVI-FLMt-17J9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216084.11e-149transcription factor BHLH089
SwissprotQ84T085e-64BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A151TFW20.0A0A151TFW2_CAJCA; Transcription factor BPE
STRINGGLYMA02G02942.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-73BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]