PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11924
Common NameKK1_012288
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 416aa    MW: 48022.8 Da    PI: 9.0991
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11924genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15431231399
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    +++l +pk+f+++ ++    s + +l  +sg +W+v++   kk++++++++GW +F  +n +   +f++F++ g+++f  +v++f k
  C.cajan_11924  43 TKLLKVPKEFLKHLNE--DLSSDAILIGTSGGQWQVTI--LKKGNEIYMQNGWPQFLTDNSVVLDEFLLFRYLGDKCF--HVQIFGK 123
                    56799******55554..47889***************..**************************************..****987 PP
2B363.73e-20321411499
                    E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     l +s+v + ++l +  +fa+ +   +e  ++++l +++g+ Wev++  + +s+r + lt+GW +Fv++n+L  gD+++F+l+  ++ e  v++fr
  C.cajan_11924 321 LLRKSNVENPCILHIATEFARMYI--PEAVTEIILWNPEGKFWEVTV--NSQSKRyTQLTTGWGRFVRDNKLMRGDTCIFELE--EGNEVSVHIFR 410
                    6778999999**********9993..344569***************..888888678***********************86..567779**999 PP

                    S CS
             B3  99 k 99 
                    +
  C.cajan_11924 411 T 411
                    7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-2031126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.30831124IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1932126IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-1134121No hitNo description
SMARTSM010194.2E-1336124IPR003340B3 DNA binding domain
PfamPF023621.5E-1142123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-24311412IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-23313414IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.819318412IPR003340B3 DNA binding domain
SMARTSM010195.1E-14318412IPR003340B3 DNA binding domain
PfamPF023624.1E-16322411IPR003340B3 DNA binding domain
CDDcd100171.02E-17322410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MRDPSFHPNP KCFALVQRNN PECWHMDFHH QHTPLFFIII NNTKLLKVPK EFLKHLNEDL  60
SSDAILIGTS GGQWQVTILK KGNEIYMQNG WPQFLTDNSV VLDEFLLFRY LGDKCFHVQI  120
FGKNGCERPC LTETRQEEAA TPNLAFSNKC SLSNGCKTKK TRQKQAATPS LVRTNKSKQR  180
KTCASSFRPH ESKSCQEDMP FNNKDTLSNG CFREIRQEQT ATPCLERAEK CKQQKTFAGS  240
LHLHESKSYE EGKYDVSNIH INVVTISKDD KFNLTKYLVF SNKGLLSKNF SKPRNSIKFE  300
SSEACKLAET FTSGKPHWKH LLRKSNVENP CILHIATEFA RMYIPEAVTE IILWNPEGKF  360
WEVTVNSQSK RYTQLTTGWG RFVRDNKLMR GDTCIFELEE GNEVSVHIFR TRCAKY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164KKTRQKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217079.10.0B3 domain-containing protein Os11g0197600 isoform X2
TrEMBLA0A151TG400.0A0A151TG40_CAJCA; B3 domain-containing protein Os11g0197600 family
STRINGGLYMA11G13220.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.14e-16B3 family protein