PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12000
Common NameKK1_012369
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 116aa    MW: 13453.7 Da    PI: 10.426
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12000genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-081457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++ ++   +W  +a+ +g  +++ ++k ++
    C.cajan_12000 14 SWTPKQNKLFEKALAKYDKDtpdRWQNVAKAVG-DKSADEVKRHY 57
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-5562IPR009057Homeodomain-like
PROSITE profilePS512939.5921065IPR017884SANT domain
SMARTSM007171.0E-71163IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-131369IPR009057Homeodomain-like
CDDcd001676.64E-71461No hitNo description
PfamPF002492.6E-71457IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MASSSLKQKA CDSSWTPKQN KLFEKALAKY DKDTPDRWQN VAKAVGDKSA DEVKRHYEIL  60
LEDLRHIESG RVPLPKYKSI GSSSCVDEEE RKKKKKRLLT KTLKPLTFFL KLRIFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30188184RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995ERKKKKK
28997ERKKKKKRL
39096RKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217930.17e-62protein RADIALIS-like 4
SwissprotQ1A1736e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A151TGA12e-78A0A151TGA1_CAJCA; Uncharacterized protein
STRINGGLYMA11G12460.12e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-36RAD-like 6