PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12068
Common NameKK1_012437
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family YABBY
Protein Properties Length: 216aa    MW: 24092.1 Da    PI: 4.6487
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12068genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY202.91.3e-6261642168
          YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                    ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas    +lla+ shl+         ++ ++ee+ + ++ +++sas
  C.cajan_12068   6 HLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASfvpfHLLASLSHLEP--------KESSQEEDAN-KTLNSHSAS 92 
                    7899**********************************************999778788888888432........2222222222.223344444 PP

          YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                      + s   + +e++ +p    v++PPekrqr Psayn+fikeei+r+ka+nPd++h+eafs+aaknWa fP+  +
  C.cajan_12068  93 LMTYS---DCEEEDVIPISNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQY 164
                    43333...4566777887788**************************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.8E-6411164IPR006780YABBY protein
SuperFamilySSF470959.82E-10109163IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-6112163IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSTLNHLFDL PEQICYVQCG FCTTILMVSV PCSSLSMVVT VRCGHCTSLL SVNMMKASFV  60
PFHLLASLSH LEPKESSQEE DANKTLNSHS ASLMTYSDCE EEDVIPISNV VNKPPEKRQR  120
TPSAYNCFIK EEIKRLKAEN PDMAHKEAFS TAAKNWANFP PTQYKGDEES SSQTDQLVDL  180
DSQVDPPDVG VNEDEGQGFR GIKVPRNSIL ERTPFE
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12068
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150436e-62AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216177.21e-161axial regulator YABBY 4
SwissprotQ9LDT33e-75YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A151TGK31e-160A0A151TGK3_CAJCA; Axial regulator YABBY 4
STRINGXP_007157432.11e-145(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-77YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]