PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12224
Common NameKK1_012597
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ZF-HD
Protein Properties Length: 201aa    MW: 21433 Da    PI: 10.1413
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12224genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.11.6e-314194357
    ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                   k+rY+eClkNhA+ +Ggha+DGCgEfm++ g+egt +alkCaAC+CHRnFHR+e 
  C.cajan_12224 41 KARYRECLKNHAVGIGGHALDGCGEFMAA-GTEGTLDALKCAACNCHRNFHRKEX 94
                   689*************************9.999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-233093IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.2E-294294IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-294393IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.264493IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.1E-32125200IPR009057Homeodomain-like
SuperFamilySSF466891.24E-19126199IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-26138194IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAGGASYDSL PNPTRMKMPG GAEVMAATPV RSTSNGAGAG KARYRECLKN HAVGIGGHAL  60
DGCGEFMAAG TEGTLDALKC AACNCHRNFH RKEXRGVLPH RAAGTLALPS TSGGGGTQST  120
REDQEDVSNP SAGGSGSKKR FRTKFTSEQK DKMLDLAEKL GWRIQKHDEA VVQAFCNETG  180
VKRHVLKVWM HNNKHTLGKK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-271391961875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12224
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-113AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216790.11e-138zinc-finger homeodomain protein 1
SwissprotQ9SB613e-71ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A151TGZ51e-146A0A151TGZ5_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGGLYMA02G04550.21e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-72homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]