PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12291
Common NameKK1_012665
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 26006.7 Da    PI: 8.8408
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12291genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.6e-271161151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   +ri+n++ rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyey+s
  C.cajan_12291 11 ERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYAS 61
                   69***********************************************86 PP
2K-box72.89.8e-2584173998
          K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                    + e + + +q+e++ L+++++nLq++ R+l+Ge+L  Ls+++Lq Le+qLe sl+ +R kK+++l+++i+el +k   + +en +L kk+
  C.cajan_12291  84 NPEFDVKFWQREAETLRQQLQNLQESYRQLMGEQLYGLSVRNLQDLENQLEMSLQDVRMKKEQILKDEIQELNRKGSLIFQENVELFKKV 173
                    55667899****************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.992363IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-32483IPR002100Transcription factor, MADS-box
CDDcd002656.00E-43479No hitNo description
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-27525IPR002100Transcription factor, MADS-box
PfamPF003195.4E-251259IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-272540IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-274061IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2488173IPR002487Transcription factor, K-box
PROSITE profilePS5129713.33789180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
KRMGRGKIVI ERIDNSTSRQ VTFSKRRKGL IKKAKELAIL CDAQVGLVIF SSTGKLYEYA  60
STSMKSIIER YTTCKEEQRH HQINPEFDVK FWQREAETLR QQLQNLQESY RQLMGEQLYG  120
LSVRNLQDLE NQLEMSLQDV RMKKEQILKD EIQELNRKGS LIFQENVELF KKVYGTIDVT  180
TTSKNPFVSP PYGIGARGCP QQMVELQLCQ PEQEAYETSE TATK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21372170MEF2C
5f28_B3e-21372170MEF2C
5f28_C3e-21372170MEF2C
5f28_D3e-21372170MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12291
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029127526.11e-162MADS-box transcription factor 23 isoform X2
SwissprotQ388404e-85AGL17_ARATH; Agamous-like MADS-box protein AGL17
TrEMBLA0A151TH391e-164A0A151TH39_CAJCA; Agamous-like MADS-box protein AGL17 (Fragment)
STRINGGLYMA01G02525.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.12e-87AGAMOUS-like 17
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]