PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12466
Common NameKK1_012845
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 133aa    MW: 15243.3 Da    PI: 9.8206
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12466genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1231.4e-3845120277
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                    Cq+++C +dls ak+y+rrhkvC+ hskapvvlvs ++qrfCqqCs+fhel efD ++rsCr rLa+hnerrr+k 
  C.cajan_12466  45 CQADECGEDLSMAKSYNRRHKVCQRHSKAPVVLVSTIRQRFCQQCSKFHELAEFDGNRRSCRIRLAGHNERRRRKV 120
                    *************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-3038106IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.91542119IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.54E-3344120IPR004333Transcription factor, SBP-box
PfamPF031109.6E-3145119IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDNIGKQEDG EKVEEAVNGV KKAQNITIKV VRGKGSRRGS SCSFCQADEC GEDLSMAKSY  60
NRRHKVCQRH SKAPVVLVST IRQRFCQQCS KFHELAEFDG NRRSCRIRLA GHNERRRRKV  120
RADHCLEDDQ LQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2835118184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-39AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216842.11e-93squamosa promoter-binding protein 1
SwissprotQ387411e-34SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A151THN13e-92A0A151THN1_CAJCA; Squamosa promoter-binding protein 1
STRINGGLYMA11G08905.12e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-31squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]