PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_12617

Common Name

KK1_013006

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

TALE

Protein Properties

Length: 656aa MW: 72217.2 Da PI: 6.7908

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_12617	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	459	496	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + C.cajan_12617 459 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 496 664559******************************88 PP
2	BELL	92.1	5.2e-30	336	390	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v++sF+ ++g g+a pYt+lA+ka+SrhFrcLkdai+ q+ C.cajan_12617 336 QVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 390 7***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.0E-56	207	388	IPR006563	POX domain
Pfam	PF07526	7.5E-47	212	387	IPR006563	POX domain
PROSITE profile	PS50071	12.568	437	500	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	440	504	IPR001356	Homeobox domain
CDD	cd00086	1.89E-12	440	501	No hit	No description
SuperFamily	SSF46689	3.21E-17	441	507	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-29	443	506	IPR009057	Homeodomain-like
Pfam	PF05920	3.2E-18	457	496	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MSQEYQQGIF SFSNGLERGR VSPQQQIRRE KVRFEAAPLV GIEEEEAVYE SGGMLSEMFN 60 FPPAAELVEQ QQQAVTGRQG GEWYGNRQNG GNNGRDGLVH NQIPSINADS AAAMQLFLMN 120 PQTRSPSPPP SSTLHMLLPN PSSNSLQGPF GQFTWVPQNV VEGQGLSLSL SSSLEAAKAE 180 EFRIGDTGAM GHDSNHQGHV GFASSSLGVV NVMRNSKYVK AAQDLLEEFC SVGRGHFKKT 240 KFNTQNSNPN SNPAAGGAAS SPSSKDAPPP PPLSAPDRIE HQRRKVKLLS MLDEACILIS 300 LSLSLFLSVP LSPSLPHQES SCEYLTCQIK FHFFFQVDRR YNHYCEQMQM VVNSFDLMMG 360 FGAAVPYTAL AQKAMSRHFR CLKDAITAQL KHSCELLGEK DGAGTSGLTK GETPRLKMLE 420 QSLRQQRAFH QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG 480 LSRNQVSNWF INARVRLWKP MVEEMYQQEL KEAECAEERE KNSNSSKRSD INAPESDPSL 540 VVINRQGFSE NQAKQSTSAT TSTTAMASVS APASEVAPPV SQCFDSDLPP HRLMATDDTC 600 RFVTPDFGTA SASADIGSTL IRFGTTPGDV SLTLGLRHAG NMPEKTPFSV RDFGGI

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MSQEYQQGIF SFSNGLERGR VSPQQQIRRE KVRFEAAPLV GIEEEEAVYE SGGMLSEMFN  60
FPPAAELVEQ QQQAVTGRQG GEWYGNRQNG GNNGRDGLVH NQIPSINADS AAAMQLFLMN  120
PQTRSPSPPP SSTLHMLLPN PSSNSLQGPF GQFTWVPQNV VEGQGLSLSL SSSLEAAKAE  180
EFRIGDTGAM GHDSNHQGHV GFASSSLGVV NVMRNSKYVK AAQDLLEEFC SVGRGHFKKT  240
KFNTQNSNPN SNPAAGGAAS SPSSKDAPPP PPLSAPDRIE HQRRKVKLLS MLDEACILIS  300
LSLSLFLSVP LSPSLPHQES SCEYLTCQIK FHFFFQVDRR YNHYCEQMQM VVNSFDLMMG  360
FGAAVPYTAL AQKAMSRHFR CLKDAITAQL KHSCELLGEK DGAGTSGLTK GETPRLKMLE  420
QSLRQQRAFH QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG  480
LSRNQVSNWF INARVRLWKP MVEEMYQQEL KEAECAEERE KNSNSSKRSD INAPESDPSL  540
VVINRQGFSE NQAKQSTSAT TSTTAMASVS APASEVAPPV SQCFDSDLPP HRLMATDDTC  600
RFVTPDFGTA SASADIGSTL IRFGTTPGDV SLTLGLRHAG NMPEKTPFSV RDFGGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	446	504	5	63	Homeobox protein Meis2
3k2a_B	2e-16	446	504	5	63	Homeobox protein Meis2
4xrm_A	2e-16	446	504	5	63	Homeobox protein Meis2
4xrm_B	2e-16	446	504	5	63	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_12617

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-151	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020216091.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-167	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A151TI19	0.0	A0A151TI19_CAJCA; BEL1-like homeodomain protein 4
STRING	XP_007156875.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-140	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]