PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_12642

Common Name

KK1_013031

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24853 Da PI: 7.6581

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_12642	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.9e-20	56	110	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+++++ eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ C.cajan_12642 56 KKRKLSVEQVNLLEQNFGSEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKN 110 567999***********************************************95 PP
2	HD-ZIP_I/II	118.1	4.8e-38	55	147	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kkr+ls eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ e++rLe+ev +L+++l+e C.cajan_12642 55 NKKRKLSVEQVNLLEQNFGSEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKTHESTLLEKCRLESEVLKLKDQLSE 147 59****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.103	51	111	IPR001356	Homeobox domain
SMART	SM00389	1.0E-17	54	115	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-18	55	120	IPR009057	Homeodomain-like
Pfam	PF00046	7.5E-17	56	110	IPR001356	Homeobox domain
CDD	cd00086	1.56E-15	56	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-20	58	119	IPR009057	Homeodomain-like
PRINTS	PR00031	1.5E-5	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.5E-5	91	107	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
TTMNHRPFQD PMMLISQLYP GDAYTQIIAQ QGEKKPRRRR NKKNKGGENS ASEANKKRKL 60 SVEQVNLLEQ NFGSEHKLES ERKDKLAMEL GLDPRQVAVW FQNRRARWKN KKLEEEYSSL 120 KKTHESTLLE KCRLESEVLK LKDQLSEAEK EIQRLLQSAD RVPSNSSSSS QSQSVEALDP 180 PFLGEFGVDG YDDDVFYVPE THYINGMEWI NLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	58	RRRNKKNKGGENSASEANKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_12642

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031168	0.0	KT031168.1 Glycine max clone HN_CCL_119 homeodomain/HOMEOBOX transcription factor (Glyma11g06940.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020217387.1	1e-157	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	1e-72	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A151TI40	1e-157	A0A151TI40_CAJCA; Homeobox-leucine zipper protein ATHB-40 (Fragment)
STRING	GLYMA01G38390.1	1e-118	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-51	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]