PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12749
Common NameKK1_013141
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 371aa    MW: 40721.3 Da    PI: 6.4546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12749genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.66.8e-16135181455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  C.cajan_12749 135 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 181
                    6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20128191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-20128191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.04E-17134185No hitNo description
PfamPF000102.3E-13135181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGDMYHFDKN LSSQDEISLF LRQILLRSSP SSSSSSHFMP GSNAPHHNLN AHPSFSPSPL  60
QDGKIPALDS TASFAIKPLH VSAANVSSSP VGVSENENDD YDCESEEGVD ALAEEVPTKP  120
APSRSSSKRS RAAEVHNLSE KRRRSRINEK MKALQNLIPN SNKTDKASML DEAIEYLKQL  180
QLQVQMLSMR NGLSLHPMCY PEGLQLSQMS MELSERNRST PLNMTATLPL HQENPLHYAS  240
NLPNKHAVPN QPSAPYPPYI NNSETSFGLE SRIQPDIKPL QHKGTSEPIR GEDLLHYQQS  300
SAIHSDANTL VGSQVVKEFE SGTTASLSFD TQTCDPKGNN SLHTCIGGRD QSGVVIRNSE  360
ANIVVTSQLS R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12749
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311170.0KT031117.1 Glycine max clone HN_CCL_124 bHLH transcription factor (Glyma11g05810.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216005.10.0transcription factor SPATULA isoform X1
TrEMBLA0A151TIE60.0A0A151TIE6_CAJCA; Transcription factor SPATULA
STRINGGLYMA11G05810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-44bHLH family protein