PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12791
Common NameKK1_013183
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WOX
Protein Properties Length: 283aa    MW: 31714.6 Da    PI: 5.8655
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12791genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.9e-202990257
                   T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  C.cajan_12791 29 STRWTPTSDQIRILKDLYYNngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 90
                   58*****************8567*************************************97 PP
2Wus_type_Homeobox113.41.2e-362892265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
      C.cajan_12791 28 SSTRWTPTSDQIRILKDLYYnNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 92
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-8790IPR009057Homeodomain-like
SuperFamilySSF466899.84E-12992IPR009057Homeodomain-like
PROSITE profilePS5007110.9652591IPR001356Homeobox domain
SMARTSM003895.3E-62795IPR001356Homeobox domain
CDDcd000867.43E-83092No hitNo description
PfamPF000462.1E-173090IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMEPQQAQPS QQSEDGGSGK GGFLSRQSST RWTPTSDQIR ILKDLYYNNG IRSPSAEQIQ  60
RISARLRQYG KIEGKNVFYW FQNHKARERQ KKRFTSDNNV PMQQRNISAS ASAWKPDDPL  120
HTKYSNLSST GISPASSSSA EMVTVGQMGN YGYGSVPMEK SFRDCSISAG GSSGHVGVNH  180
NLGWVGVDPY SSAYANFFDK IRPTEETLEE DEEEEDGDAE IETLPLFPMH GEDIHGYCNL  240
KSNSYNYDGN TWYHHTEDGF KNGSRASLEL SLNSYTRRSP DFA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12791
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8730900.0EU873090.1 Glycine max wuschel gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216877.20.0protein WUSCHEL
SwissprotQ8LL114e-87WUS_PETHY; Protein WUSCHEL
TrEMBLA0A151TIL20.0A0A151TIL2_CAJCA; Protein WUSCHEL
STRINGXP_007157924.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-45WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]