PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12949
Common NameKK1_013349
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARR-B
Protein Properties Length: 558aa    MW: 62361.3 Da    PI: 6.2845
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12949genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.46.8e-28313367156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++WtpeLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++
  C.cajan_12949 313 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILEIMKVDGLTRHNVASHLQKYRIH 367
                    5689*****************.********************************86 PP
2Response_reg28.29.5e-11201261109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                    vl+ + + + +  +++ le  +y +v ++ d  eal  +  +   +++ ++ ++ +  + G+++l++     ++lp i+ +  +  +++ +++ +G
  C.cajan_12949  20 VLLLEGDSSSAAEIKEQLEAMDY-NVSTFFDENEALSAISSSPegFHVAIVEVSSSSsLGGFKFLENA----KDLPTIMTSKDQCLNTMMKCIALG 110
                    67777788888999*********.***************888888*******9999988999998753....4689999999999*********** PP

                    ESEEEESS--HHHHHH CS
   Response_reg  94 akdflsKpfdpeelvk 109
                    a +flsKp ++++l +
  C.cajan_12949 111 AVEFLSKPLSEDKLKN 126
                    ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-1616156No hitNo description
SuperFamilySSF521723.13E-1516134IPR011006CheY-like superfamily
SMARTSM004484.5E-518128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.35719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-720126IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.67E-921131No hitNo description
PROSITE profilePS5129416.77310369IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-27311370IPR009057Homeodomain-like
SuperFamilySSF466892.69E-18312369IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-25313368IPR006447Myb domain, plants
PfamPF002491.4E-7316365IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MVCTANDLQG WKDFPKGLRV LLLEGDSSSA AEIKEQLEAM DYNVSTFFDE NEALSAISSS  60
PEGFHVAIVE VSSSSSLGGF KFLENAKDLP TIMTSKDQCL NTMMKCIALG AVEFLSKPLS  120
EDKLKNIWQH VVHKAFNAGA NVLSESLKPV KESVESMLQH QADSEQDKSM KLIDLENVSR  180
FSDNDHEQSA VCDKYPAPST PQLKHGTRLL DDGDCHEQTN CSTEKESGEH DGECKSVETS  240
CDNLNAESSP QPREPDKTLI KEEEDFANGS KSENTVPLNP HNKELLNNAD HNTSPNKTGV  300
LNDSCEIKAN RKKMKVDWTP ELHKKFVKAV EQLGIDQAIP SRILEIMKVD GLTRHNVASH  360
LQKYRIHKRQ SAPGDDDRKW PNQRDAMQRS YYMQRPIMAY PPYHTNHTLS PAPIYPMWGQ  420
PGSQTAGVQI WGPPSYPLWH PTESWHWKPY PGVHVDAWGC PMFPPPQAPC FPYNQNIPGL  480
HNPKAVDYRF GMPRSSFEHH PAEEVVDKVV KEAMSKPWLP LPLGLKPPSM DSVLAELSKQ  540
GISSIPLGNK GYSPSKPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16311366358ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12949
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-135AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216417.10.0two-component response regulator-like APRR2
RefseqXP_020216418.10.0two-component response regulator-like APRR2
RefseqXP_029127632.10.0two-component response regulator-like APRR2
SwissprotQ6LA431e-142APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A151TJ040.0A0A151TJ04_CAJCA; Two-component response regulator-like APRR2
STRINGGLYMA11G04441.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-132ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]